Publications Jean Paul Allain RSSEL

Peer-reviewed Publications, Book Chapters and Patents ORCID iD icon orcid.org/0000-0003-1348-262X

A. Peer-reviewed Publications

2024

187. Marchhart, T., Hargrove, C., Marin, A., Schamis, H., Saefan, A., Lang, E., Wang, X., Allain, J.P. (2024) “Discovering tungsten-based composites as plasma facing materials for future high-duty cycle nuclear fusion reactors”, Scientific Reports, 14, Article number: 13864, Nature Publishing Group
186. Mesa-Restrepo, A., Byers, E., Brown, J.L., Ramirez, J., Allain, J.P., Posada, V.M. (2024) “Osteointegration of Ti Bone Implants: A Study on How Surface Parameters Control the Foreign Body Response”, ACS Biomater. Sci. Eng., Publication Date: July 30, 2024
185. Ozden, B., Aditya, T., Cherry, J., Yu, Z., Allain, J.P., Terrones, M., (2024); “The effect of gamma ray irradiation on few layered MoSe₂: A material for nuclear and space applications”. AIP Advances 1 February 2024; 14 (2): 025012.
184. Posada, V.M., Marin, A., Mesa-Restrepo, A., Nashed, J., Allain J.P. (2024), “Enhancing silk fibroin structures and applications through angle-dependent Ar+ plasma treatment”, International Journal of Biological Macromolecules 257, 12835
183. Posada, V.M., Ramírez, J., Civantos, A., Fernández-Morales, P., Allain, J.P., (2024)
“Ion-bombardment-driven surface modification of porous magnesium scaffolds: Enhancing biocompatibility and osteoimmunomodulation”,
Colloids and Surfaces B: Biointerfaces,
Volume 234, 2024, 113717, ISSN 0927-7765
182. Schamis, H.; Jaramillo-Correa, C.; Parsons, M.S.; Marchhart, T.; Allain, J.P.; Hargrove, C.; Judge, A; , K.; Kunz, E.; López Pérez, C.; Nieto-Perez, M.; Shober, H. (2024); “The ion-gas-neutral interactions with surfaces-2 (IGNIS-2) facility for the study of plasma–material interactions”, Rev. Sci. Instrum. 95, 043508, April 2024

2023

181. Aditya, T., Restrepo, AM, Civantos, A., Cheng, MK., Jaramillo-Correa, C., Posada, V., Koyn, Z., Allain, J.P. (2023), “Ion Bombardment-Induced Nanoarchitectonics on Polyetheretherketone Surfaces for Enhanced Nanoporous Bioactive Implants”,
ACS Appl. Bio Mater. 2023, Publication Date: November 6, 2023, https://doi.org/10.1021/acsabm.3c00642
180. Allain J.P., Allain S., (2023),“The Post-Industrial Midwest and Appalachia (PIMA) Nuclear Alliance”, Journal of Critical Infrastructure Policy, Volume 3, Number 2, Fall / Winter 2023, doi: 10.18278/jcip.3.2.6p
179. Civantos, A., Mesa-Restrepo, A., Torres, Y., Shetty, A., Cheng, M., Jaramillo-Correa, C., Aditya, T., Allain, J.P. (2023) “Nanotextured porous titanium scaffolds by argon ion irradiation: Toward conformal nanopatterning and improved implant osseointegration”, J Biomed Mater Res A. 2023 Jun 19. doi: 10.1002/jbm.a.37582.
178. Garrison, L.M., Katoh, Y., Hinoki, T., Hashimoto, N., Echols, J. R., Geringer, J. W., Reid, N.C., Allain, J.P., Cheng, B., Dorow-Gerspach, D., Ganesh, V., Gietl, H., Humphry-Baker, S. A., Lang, E., McCue, I., Riesch, J., Snead, L.L., Smith, G.D.W., Trelewicz, J. R., Yang,Y., Zinkle, S.J. (2023), “Review of Recent Progress in Plasma-Facing Material Joints and Composites in the FRONTIER U.S.-Japan Collaboration“, Fusion Science and Technology, Volume 79, 2023 – Issue 6, 662-670, DOI: 10.1080/15361055.2023.2176687
177. Jaramillo-Correa, C.; Allain, J.P.; Clark, R.; Cloutis, E.; Domingue, D. L.; Hendrix, A.; Pearson, N.; Savin, D. W.; Vilas, F., (2023) “Effects of Atmospheric Processing on Minerals Relevant to Small Bodies”, Lunar and Planetary Science Contribution No. 2806, id.2774, March 2023
176. Jaramillo-Correa, C., Posada, V.M., Nashed, J., Civantos, A., Allain, J.P., (2023) “Analysis of Antibacterial Efficacy and Cellular Alignment Regulation on Plasma Nanotextured Chitosan Surfaces”, Langmuir, ACS, DOI: 10.1021/acs.langmuir.3c01808, October 5, 2023
175. Lang, E.; Taylor, C.; Madden, N.; Marchhart, T.; Smith, C.; Wang, X.; Krogstad, J.; Allain, J.P. (2023), “Examination of Early-Stage Helium Retention and Release in Dispersion-Strengthened Tungsten Alloys“, Fusion Science and Technology, DOI: 10.1080/15361055.2022.2164444, March 10, 2023
174. López Pérez, C.; Marchhart, T.; Kawashimo, K.; Nieto-Perez, M.; Parsons, M. S.; Schamis, H., Allain, J.P. (2023) “A liquid metal dropper for experiments on the wettability of liquid metals on plasma facing components”, Rev. Sci. Instrum. 94, 103506, 2023, Received: June 29 2023, online 10.16.23, https://doi.org/10.1063/5.0165646
173. López Pérez, C., Marchhart, T., Marin, A., Nieto-Perez, M., Allain, J.P. (2023) “Liquid lithium wettability studies on novel zirconium-alloyed porous tungsten”, Nuclear Materials and Energy, Volume 37, 2023, 101525, ISSN 2352-1791
172. Otto, M., Fouliard, Q., Kapat, J., Raghavan, S., Koyn, Z., Allain, J.P., (2023), “High-Temperature Tungsten Liquid Metal Heat Pipes: Applications and Performance”, AIAA 2023-0713, Published Online:19 Jan 2023 https://doi.org/10.2514/6.2023-0713
171. Parsons, M.S., Smith, C.S., Jaramillo-Correa, C., Allain, J.P. (2023), “Proof-of-Concept Modeling for the Use of Neutron Reflectometry for the In-Situ Diagnosis of Deuterium Accumulation in Tungsten and Dispersion-Strengthened Tungsten Alloys“, Fusion Science and Technology, DOI: 10.1080/15361055.2023.2240200, online September 5, 2023
170. Parsons, M., Mateja, J., Messer, S., Abrams, T., Allain, J.P., Bortolon, A., Byrne, P., Donovan, D., Effenberg, F., Herfindal, J., Laggner, F., Odstrcil, T., Dmitry L. J.R., Gregory Sinclair, R., Wilcox,R.(2023), “Tungsten erosion and divertor leakage from the DIII-D SAS-VW tungsten-coated divertor in experiments with neon gas seeding”, Nuclear Materials and Energy, Volume 37, 2023, 101520, ISSN 2352-1791, https://doi.org/10.1016/j.nme.2023.101520.
169. Saefan, A., Liu, X., Lang, E., Higgins, L., Wang, Y., El-Atwani, O., Allain, J.P., Wang, X. (2023) “Effects of transition metal carbide dispersoids on helium bubble formation in dispersion-strengthened tungsten”. Scientific Reports 13, 13352, Nature, August 16, 2023. https://doi.org/10.1038/s41598-023-40421-0

2022

168. Andruczyk, D., Shone, A., Koyn, Z., Allain, J.P. (2022), “First lithium experiments in HIDRA and evidence of helium retention during quasi-steady-state stellarator plasma operations” – Plasma Physics and Controlled Fusion, Volume 63, Issue 8, 2022/7/6
167. Aditya, T., Allain, J.P., Jaramillo, C., Mesa Restrepo, A., (2022), “Surface Modification of Bacterial Cellulose for Biomedical Applications”, International Journal of Molecular Sciences, 2022, 23(2), 610; Special Issue Bacterial Cellulose: Synthesis, Structure, and Biomedical Application
166. Jaramillo, C.; Pearson, N.; Hendrix, A.; Vilas, F.; Allain, J. P.; Clark, R.; Savin, D. W.; Domingue, D. L. (2022), “UV-Visible Reflectance Measurements of Minerals Before and After Exposure to Air”, Lunar and Planetary Science Contribution No. 2678, 2022, id.2378
165. Kapat, A., Allain, J.P., Bedoya, F., Woller, K.B. (2022) “Liquid lithium wetting and percolation in a porous tungsten/liquid Li plasma facing component (PFC)”, Fusion Engineering and Design, Volume 178, May 2022, 113087, online March 11, 2022
164. Shone, A., Koyn, Z., Kamiyama, B., Perez, E., Barrus, L., Bartlett, N., Allain, J.P., Andruczyk, D. (2022), “HIDRA-MAT liquid metal droplet injector for liquid metal applications in HIDRA”, Fusion Engineering and Design, Volume180, July 2022, 113193i
163. Vilas, F.; Hendrix, A. R.; Jaramillo, C.; Pearson, N.; Zolensky, M. E.; Domingue, D. L.; Cloutis, E.; Clark, R.; Holsclaw, G.; Allain, J. P.; Nakamura, T.; Matsuoka, M.; Amano, K.; Morita, T.; Kikuiri, M.; Kagawa, E.; Yurimoto, H.; Noguchi, T.; Okazaki, R.; Yabuta, H.; Naraoka, H.; Sakamoto, K.; Tachibana, S.; Watanabe, S.; Tsuda, Y., (2022), “Ultraviolet/Visible Reflectance Spectra of Returned Samples of (162173) Ryugu Unexposed to Earth’s Atmosphere”, Lunar and Planetary Science Contribution No. 2678, 2022, id.2373, March 2022

2021

162. Beers, C.J., Jaramillo, C., Reid, N.C., Schamis, H., Allain, J.P., Caughman, J.B.O., Meitner, S.J., Rapp, J., Zinkle, S.J. (2021) “Development of the material analysis and particle probe for Photo-MPEX“, Review of Scientific Instruments 92, 045108, online April 16, 2021
161. Jaramillo, C.; Allain, J. P.; Pearson, N.; Clark, R.; Savin, D. W.; Domingue, D. L.; Hendrix, A., (2021), “Laboratory simulations of solar wind-driven space weathering on olivine powder”, Lunar and Planetary Science Contribution No. 2548, id.2561, March 2021
160. Mesa-Restrepo, A., Civantos, A., Allain, J.P., Patiño, E., Alzate, J.F., Balcázar, N., Montes, R., Pavón, J.J., Rodríguez-Ortiz, J.A., Torres Y. (2021) “Synergistic Effect of rhBMP-2 Protein and Nanotextured Titanium Alloy Surface to Improve Osteogenic Implant Properties“, Metals, 11 (3), 464, March 2021
159. Posada, VM; Civantos, A; Ramírez, J.; Fernández-Morales, P.; Allain, J.P. (2021) “Tailoring adaptive bioresorbable Mg-based scaffolds with directed plasma nanosynthesis for enhanced osseointegration and tunable resorption”, Applied Surface Science 550, Volume 550, 1 June 2021, 149388
158. Reid, N.C., Garrison, L., Gussev, M., Allain, J.P. (2021) “Design and Analysis of an Advanced Three-Point Bend Test Approach for Miniature Irradiated Disk Specimens” Fusion Science and Technology, DOI: 10.1080/15361055.2021.1925032 , online June 14, 2021, Volume 77, Issue 7-8, pg. 907-914, 2021/11/17

2020

157. Arias, S., Cheng, M.K., Civantos, A., Devorkin, J., Jaramillo, C., Allain, J.P. (2020) “Ion-Induced Nanopatterning of Bacterial Cellulose Hydrogels for Biosensing and Anti-Biofouling Interfaces“, ACS Applied Nano Materials, June 15, 2020
156. Arias, S., Devorkin, J., Civantos, A., Allain, J.P. (2020) “Escherichia coli Adhesion and Biofilm Formation on Polydimethylsiloxane are Independent of Substrate Stiffness“, Langmuir 2020, American Chemical Society, online April 15, 2020
155. Arias, S., Devorkin, J., Spear, J.C., Civantos, A., Allain, J.P. (2020) “Bacterial Envelope Damage Inflicted by Bioinspired Nanostructures Grown in a Hydrogel“, ACS Applied Bio Materials, 2020, 3,11, 7974-7988, October 2020
154. Civantos, A., Giner, M., Trueba, P., Lascano S., Montoya-García, M.J., Arévalo, C.,Vázquez, M.A., Allain, J.P., Torres, Y. (2020) “In Vitro Bone Cell Behavior on Porous Titanium Samples: Influence of Porosity by Loose Sintering and Space Holder Techniques”, Metals, 2020, 10, 696
153. Jaramillo, C.; Allain, J. P.; Savin, D.; Pearson, N.; Domingue, D. L.; Hendrix, A. R., (2020), “Toolbox for Research and Exploration (TREX): Facility for the Investigation of Space Weathering Effects on Regolith-Like Loose Powders”, Lunar and Planetary Science Contribution No. 2326, 2020, id.2559, March 2020
152. Lang, E., Kapat, A., Morgan, TW., Allain, J.P. (2020) “High Flux Helium Irradiation of Dispersion-Strengthened Tungsten Alloys and Effects of Heavy Metal Impurity Layer Deposition” Journal of Nuclear Materials, online November 13, 2020, Volume 544, pg. 152672, 2021/2/1
151. Lang, E., Schamis, H, Madden, N., Smith,C., Kolasinski, R., Krogstad, J., Allain, J.P. (2020) “Recrystallization Suppression Through Dispersion-Strengthening of Tungsten“, Journal of Nuclear Materials, 152613, online November 4, 2020, Volume 545, pg. 152613, 2021/03/01
150. Lang, E., Taylor, CN., Allain, J.P. (2020) “GD-OES study of the influence of second phase particles on the deuterium depth distribution in dispersion-strengthened tungsten”, Journal of Nuclear Materials, 2020
149. Lively M., Holybee, B., Toriyama, M., Facsko, S., Allain, J.P. (2020) “Nonlinear compositional and morphological evolution of ion irradiated GaSb prior to nanostructure formation“, Scientific Reports, Springer Nature, online May 19, 2020
148. Luo, P., Jaramillo, C., Wallum, A.M., Liu, Z., Zhao, R., Shen, L., Zhai, Y., Spear, J.C., Curreli, D., Lyding, J.D., Gruebele, M., Wang, W., Allain, J.P., Y Z (2020) “Coherent Atomic-Scale Ripples on Metallic Glasses Patterned by Low-Energy Ion Irradiation for Large-Area Surface Structuring“, ACS Applied Nano Materials, December 2, 2020
147. Posada, V.M., Ramirez, J., Allain, J.P., Shetty, A.R., Fernandez-Morales, P. (2020) “Synthesis and Properties of Mg-Based Foams by Infiltration Casting Without Protective Cover Gas“, Journal of Materials Engineering and Performance, p.p. 1-10, online January 21, 2020
146. Shone, A., Koyn, Z., Rizhallah, R., O’Dea, D., Kapat, A., Golba, G., Hoffman, J., Kurukulasuriya, D.k Tang, Q., de Castro, A., Allain, J.P., Andruczyk, D. (2020) “An Overview of the Hybrid Illinois Device for Research and Applications Material Analysis Test-stand (HIDRA-MAT)“, Journal of Fusion Energy, September 26, 2020

2019

145. Allain, J.P. (2019) “Alternative Plasma-Facing-Material Concepts for Extreme Plasma-Burning Nuclear Fusion Environments“, Fusion Science and Technology, Volume 75, 2019 Issue 7, pages 702-718, October 7, 2019
144. Bedoya, F., Allain, J.P., Dominguez-Gutierrez, F.J., Drstic, P.S. (2019) “Effect of deuterium irradiation on graphite boronized in the NSTX-U tokamak“, Scientific Reports, Springer Nature, Vol 9, Art. 2435, February 21, 2019
143. Civantos, A., Allain, J.P., Pavon, J.J., Shetty, A., El-Atwani, O., Walker, E., Arias, S., Gordon, E., Rodriguez-Ortiz, J., Chen, M., Torres, Y. (2019) “Directed Irradiation Synthesis as an Advanced Plasma Technology for Surface Modification to Activate Porous and “as-received” Titanium Surfaces“, Metals, Special Issue: Tailor-Made Porous Biomaterials for Hard and Soft Tissues, 9(12), 1349, December 15, 2019
142. Civantos, A., Barnwell, A., Shetty, A.R., Pavon, J., El-Atwani, O., Arias, S.L, Lang, E., Reece, L.M., Chen, M., Allain, J.P. (2019) “Designing nanostructured Ti6Al4V bioactive interfaces with directed irradiation synthesis towards cell stimulation to promote host-tissue-implant integration“, ACS Biomaterials Science & Engineering, online May 13, 2019
141. Civantos, A., Dominguez, C., Pino, R.J., Setti, G., Pavon, J.J., Martinez-Campos, E., Garcia-Garcia, F.J., Rodriguez, J.A., Allain, J.P., Torres, Y (2019) “Designing bioactive porous titanium interfaces to balance mechanical properties and in vitro cells behavior towards increased osseointegration“, Surface and Coatings Technology, March 5, 2019
140. Echeverry-Rendon, M., Allain, J.P., Robledo, S.M., Echeverria, F., Harmsen, M.C. (2019) “Coatings for biodegradable magnesium based supports for therapy of vascular disease: A general view“, Materials Science and Engineering C, Vol 102, September 2019, Pages 150-163
139. Kaye, S.M., Battaglia, D. J.., Baver, D., Belova, E., Berkery, J.W., Duarte, V. N., Ferraro, N., Fredrickson, E., Gorelenkov, N., Guttenfelder, W., Hao, G. Z., Heidbrink, W., Izacard, O.,Kim, D., Krebs, I., La Haye, R., Lestz, J., Liu, D., Morton, L.A., Myra, J., Pfefferle, D., Podesta, M., Ren, Y., Riquezes, J., Sabbagh, S.A., Schneller, M., Scotti, F., Soukhanovskii, V., Zweben, S. J., Ahn, J. W., Allain, J.P., et.al. (2019) “NSTX/NSTX-U theory, modeling and analysis results“, Nuclear Fusion, Vol. 59, Issue 11, June 5,2019, Art. 112007
138. Lang, E., Madden, N., Smith, C., Krogstad, J., Allain, J.P. (2019) “Deciphering the role of second phase precipitates on early-stage surface morphology development of dispersion-strengthened W alloys under low energy He irradiation“, Nuclear Materials and Energy, Vol. 19, May 2019, Pages 47-54
137. Lang, E., Reid, N., Garrison, L., Parish, C., Allain, J.P. (2019) “Pre-Irradiation Comparison of W-Based Alloys for the PHENIX Campaign: Microstructure, Composition, and Mechanical Properties“, Fusion Science and Technology, May 2019
136. Maingi, R., Lumsdaine, A., Allain, J.P., Chacon, L., Gourlay, S.A., Greenfield, C.M., Hughes, J.W., Humphreys, D., Izzo, V., McLean, H., Menard, J.E., Merrill, B., Rapp, J., Schmitz, O., Spadaccini, C., Wang, Z, White, A.E., Wirth, B.D. (2019) “Summary of the FESAC Transformative Enabling Capabilities Panel Report“, Fusion Science and Technology, 75:3, Pages 167-177, online March 26, 2019
135. Neff, A.L., Allain, J.P. (2019) “In-operando observation of helium-irradiation ion effects on surface deuterium retention through LiOH bonding in lithium films on tungsten substrates“, Nuclear Materials and Energy, Volume 19, May 2019, Pages 463-467
134. Reid, N.C., Garrison, L., Taylor, C., Allain, J.P. (2019) “Elemental Characterization of Neutron Irradiated Tungsten Using the GD-OES Technique“, Fusion Science and Technology, May 2019
133. Srivastava, I., Sar, D., Mukherjee, P., Schwartz-Duval, A.S., Huang, Z., Jaramillo, C., Civantos, A., Tripathi, I., Allain, J.P., Bhargava, R., Pan, D. (2019) “Enzyme-Catalysed Biodegradation of Carbon Dots follow Sequential Oxidation in a Time Dependent Manner“, Nanoscale, Royal Society of Chemistry, March 2019
132. Zakharov, L.E., Allain, J.P., Bennett, S.X., Abdelghany, M.A.E. , Bulgadaryian, D.G. (2019) “Low Recycling Divertor for JET Burning Plasma Regime (PDT<25 MW, QDT>5) Insensitive to Plasma Physiscs“, IEEE Transactions on Plasma Science, 2019

2018

131. Arias, SL; Shetty, A; Devorkin, J; Allain, J.P. (2018) “Magnetic targeting of smooth muscle cells in vitro using a magnetic bacterial cellulose to improve cell retention in tissue-engineering vascular grafts“, Acta Biomaterialia, Vol 77, pp 172-181, September 2018
130. Bedoya, F.; Allain, J.P.; Scotti, B., LaBombard, B., Kaita, R., Krstic, P.S. (2018) “Effect of boronization on plama-facing graphite surfaces and its correlation with the plasma behavior in NSTX-U“, Nuclear Materials and Energy, Vol. 17, pg. 211-216, December 2018
129. Dominguez-Gutierrez, F.J.; Krstic, P.S.; Allain, J.P.; Bedoya, F; Islam, M.M.; Lotfi, R; T. van Duin, A.C. (2018) “Deuterium uptake and sputtering of simultaneous lithiated, boronized, and oxidized carbon surfaces irradiated by low-energy deuterium“, Journal of Applied Physics, 123, 195901, May 2018
128. Gates D, Anderson D, Anderson S, Zarnstorff M, Spong D, Weitzner H, Neilson G, Ruzic D, Andruczyk D, Harris J, Mynick H, Hegna C, Schmitz O, Talmadge J, Curreli D, Maurer D, Boozer A, Knowlton S, Allain J.P., et al. (2018) “Stellarator Research Opportunities: A Report of the National Stellarator Coordinator Committee“, Journal of Fusion Energy, Vol 37, issue 1, pp 51-94, February 2018
127. Hammouti, S; Holybee, B; Zhu, W; Allain, J.P.; Jurczyk, B; Ruzic, D (2018), “Titanium nitride formation by a dual-stage femtosecond laser process“, Applied Physics A, 124:411, May 8, 2018
126. Krstic, P.S.; Allain, J.P.; Dominguez-Gutierrez, F.J.; Bedoya, F (2018) “Unraveling the surface chemistry processes in litigated and boronized plasma material interfaces under extreme conditions“, Matter and Radiation at Extremes, Vol 3, Issue 4, p.p. 165-187, July 2018, Review Article
125. Lang, E; Madden, N; Smith, C; Krogstad, J; Allain, J.P. (2018) “Microstructural and compositional effects of transition metal carbide additions on dispersion-strengthened tungsten fabricated via spark plasma sintering“, International Journal of Refractory Metals and Hard Materials, Vol 75, p.p. 279-286, September 2018
124. Lively, M; Bennett, S; Allain, J.P. (2018) “Molecular dynamics studies of ion beam implantation and patterning of silicon: Effect of noble gas cluster formation“, Physical Review B, Vol 97, issue 23, June 2018
123. Pavon, J.J.; Allain, J.P.; Verma, D.; Echeverry-Rendon, M.; Cooper, C.; Reece, L.; Shetty, A.; Tomar, V. (2018) “In situ Study Unravels Bio-Nanomechanical Behavior in a Magnetic Bacterial Nano-cellulose (MBNC) Hydrogel for Neuro-Endovascular Reconstruction“, Macromolecular Bioscience, First published November 19, 2018, Vol.19, Issue 2
122. Pavon, J.J.; Lopez, D.; Mondragon, F.; Gallego, J.; Arias, S.; Luitjohan, K.; Holybee, B.; Torres, Y.; Rodriguez, J.; Echeverry-Rendon, M.; Civantos, A.; Allain, J.P. (2018) “Balancing biofunctional and biomechanical properties using porous titanium reinforced by carbon nanotubes“, Journal of Biomedical Materials Research Part A, Online November 2018, Vol 107, Issue 4, April 2019, Pages 719-731
121. Rizkallah, R; Andruczyk, D.; Shone, A.; Johnson, D.; Jeckell, Z.; Marcinko, S; Song, Z; Curreli, D.; Kapat, A., Allain, J.P.; et al. (2018) “Latest Results From the Hybrid Illinois Device for Research and Applications (HIDRA)“, IEEE Transactions on Plasma Science, Issue 7, Vol. 46, pg. 2685-2690, June 2018

2017

120. Allain, J.P.; Shetty, A (2017) “Unraveling atomic-level self-organization at the plasma-material interface“, Journal of Physics D: Applied Physics, Vol 50, Number 28, Special Issue on Achieving Atomistic Control in Plasma-Material Interactions, June 2017, Topical Review
119. Bedoya, F; Allain, J.P.; Kaita, R; Skinner, CH; Koel, BE; Scotti, F (2017) “Initial studies of plasma facing component surface conditioning in the national spherical tokamak experiment upgrade with the materials analysis particle probe“, Nuclear Materials and Energy, April 6, 2017
118. Dominguez-Gutierrez, J.; Bedoya, F., Krstic, P; Allain, J.P.; Irle, S.; Skinner, C.; Kaita, R; Koel, B (2017) “Unraveling the plasma-material interface with real time diagnosis of dynamic boron conditioning in extreme tokamak plasmas“, Nuclear Fusion, June 2017
117. Echeverry-Rendon, M., Reece, L.M., Pastrana, F., Arias, S.L., Akshath, S.R., Pavon, J.J., Allain, J.P.(2017): “Bacterial Nanocellulose Magnetically Functionalized for Neuro-Endovascular Treatment“, Macromolecular Bioscience, January 24, 2017
116. El-Atwani, O, Hinks, J.A., Greaves, G., Allain, J.P., Maloy, S.A. (2017): “Grain size threshold for enhanced irradiation resistance in nanocrystalline and ultrafine tungsten“, Materials Research Letters, p.p. 343-349, February 21, 2017
115. Lang E., Kapat, A., Allain, J.P. (2017) “Deciphering surface behavior and deuterium retention in tin-lithium-coated fuzzy tungsten substrates“, Nuclear Materials and Energy, 2017 (online July 29,2017)
114. Lively, MA; Holybee, B; Toriyama, M; Allain, J.P.(2017) “Massive-scale molecular dynamics of ion-irradiated II-V compound semiconductors at the onset of nanopatterning“, Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, April 24, 2017
113. Majeski, R., Bell, R.E., Boyle, D.P., Kaita, R., Kozub, T., LeBlanc, B.P., Lucia, M., Maingi, R., Merino, E., Raitses, Y., Schmitt, J.C., Allain, J.P., Bedoya, F., Bialek, J., Biewer, T.M., Canik, J.M., Buzi, L., Koel, B.E., Patino, M.I., Capece, A.M., Hansen, C., Jarboe, T., Kubota, S., Peebles, W.A., Tritz, K. (2017) “Compatibility of lithium plasma-facing surfaces with high edge temperatures in the Lithium Tokamak Experiment“, Physics of Plasmas, 24 ( 5 ), art. no. 056110
112. Menard, J.E., Allain, J.P., Battaglia, D.J., Bedoya, F. Bell, R.E., et. al (2017) “Overview of NSTX Upgrade Initial Results and Modelling Highlights“, Nuclear Fusion vol. 57 p. 102006, October 2017
111. Skinner, C.H., Bedoya, F., Scotti, F, Allain, J.P.,Blanchard, W., Cai, D., Jaworski, M., Koel, B.E. (2017) “Advances in boronization on NSTX-Upgrade“, Nuclear Materials and Energy, Vol 12, pp 744-748, August 2017

2016

110. Arias, S.L., Akshath, S.R., Senpan, A., Echeverry-Rendon, M., Reece, L.M., Allain, J.P. (2016): “Fabrication of a Functionalized Magnetic Bacterial Nanocellulose with Iron Oxide Nanoparticles“, The Journal of Visualized Experiments (JoVE) Bioengineering, Issue 111, May 2016
109. Bedoya, F., Allain, J.P., Kaita, R., Skinner, C.H., Buzi, L., Koel, B.E. (2016) “Unraveling wall conditioning effects on plasma facing components in NSTX-U with the Materials Analysis Particle Probe (MAPP)“, Rev. Sci. Instrum. 87, 11D403, 2016
108. Dominguez-Gutierrez, F.J., Bedoya, F., Krstic, P.S., Allain, J.P., Neff, A.L., Luitjohan K. (2016): “Studies of lithiumization and boronization of ATJ graphite PFCs in NSTX-U“, Nuclear Materials and Energy, 2016
107. Kaita, R.,Lucia, M., Allain, J.P., Bedoya, F., Bell, R., Boyle, D., Capece, A., Jaworski, M., Koel, B.E., Â Majeski, R., Roszell, J., Schmitt, J., Scotti, F., Skinner, C.H., Soukhanovskii, V. (2016) “Hydrogen retention in lithium on metallic walls from in vacuo analysis in LTX and implications for high-Z plasma-facing components in NSTX-U“, Fusion Engineering and Design, Vol. 117, April 2017, 135-139p. online 2016
106. Pastrana, H.F., Cooper, C., Alucozai, M., Reece, L.M., Avila, A., Allain, J.P. (2016): “Synthesis and in vitro safety assessment of magnetic bacterial cellulose with porcine aortic smooth muscle cells“, Journal of Biomedical Materials Research Part A, 1552-4965

2015

105. Andruczyk, D., Ruzic, DN., Curreli, D., Allain, J.P., HIDRA Team. (2015) “HIDRA: Hybrid Illinois Device for Research and Applications“, Fusion Science and Technology, Volume 68, I. 3, American Nuclear Society, 2015/10/1
104. El-Atwani, O., Norris, S.A., Ludwig, K., Gonderman, S., Allain, J.P. (2015) “Ion beam nanopatterning of III-V semiconductors: consistency of experimental and simulation trends within a chemistry-driven theory“, Scientific Reports, Nature Publishing Group. 5, 18207, 16.12.2015
103. El-Atwani, O., Gonderman, S., Suslov, S., Efe, M., De Temmerman, G., Morgan, T., Bystrov, K., Hattar, K., Allain, J.P. (2015) “Early stage damage of ultrafine-grained tungsten materials exposed to low energy helium ion irradiation“, Fusion Engineering and Design, Volume 93, Pg 9-14, 2015/4/30, online 27 February 2015.
102. Ghoniem, N.M., Sehirlioglu, A., Neff, A.L., Allain, J.P., Williams, B., Sharghi-Moshtaghin, R. (2015) “Sputtering of Molybdenum and Tungsten Nano Rods & Nodules Irradiated with 150 eV argon Ions“, Applied Surface Science, Volume 331, Â 15 , Pages 299-308, March 2015
101. Kaita, R., Abrams, T., Jaworski, M., Lucia, M., Nichols, J.H., Skinner, C.H., Stotler, D., Allain, J.P., Bedoya, F. (2015) “Addressing the Challenges of Plasma-Surface Interactions in NSTX-U“, IEEE Transactions on Plasma Science, Volume 43, Issue 4, 1 April 2015, Pages 965-971, online 26 January 2015.
100. Kaye, S.M., Abrams T., Ahn, J.W. , Allain, J.P., Andre, R., Andruczyk, D., et al. (2015) “An overview of recent physics results from NSTX“, Nuclear Fusion 55,10, 2015
99. Munoz, S., Pavon, J., Rodriguez-Ortiz, J.A., Civantos, A., Allain, J.P., Torres, Y. (2015) “On the influence of space holder in the development of porous titanium implants: Mechanical, computational and biological evaluation”, Materials Characterization, Vol 108, October 2015, Pages 68-78, online September 2, 2015.
98. Yang, Z., Lively, M., Allain, J.P. (2015) “Kinetic Monte Carlo simulation of self-organized pattern formation induced by ion beam sputtering using crater functions“, Phys. Rev. B 91, 075427, 26 February 2015

2014

97. El-Atwani, O., Hinks, J., Greaves, G., Gonderman S., Qiu, T., Efe, M., Allain, J.P. (2014) “In-situ TEM observation of the response of ultrafine- and nanocrystalline-grained tungsten to extreme irradiation environments“, Scientific Reports, Nature Publishing Group. 4, 4716, 06.05.2014
96. El-Atwani, O., Gonderman, S., Efe, M., De Temmerman, G., Morgan, T., Bystrov, K., Hinks, J., Greaves, G., Klenosky, D., Qiu, T., Allain, J.P. (2014) “Ultrafine tungsten as a plasma-facing component in fusion devices: effect of high flux, high fluence low energy helium irradiation“, Nuclear Fusion, 54, 8, 083013.
95. Hattar, K., El-Atwani, O., Efe, M., Novakowski, T.J., Suslova, A., Allain, J.P. (2014) “Helium Implantation of Ultrafine Grained Tungsten within a TEM“, Materials Research Society Proceedings. 1645, mrsf13-1645-zz01-04, Cambridge University Press.
94. Lucia, M., Kaita, R., Majeski, R., Bedoya, F., Allain, J.P., Boyle, D.P., Schmitt, J.C., St Onge, D.A. (2014) “Development progress of the Materials Analysis and Particle Probe“, Review of Scientific Instruments, 85, 11, 11D835
93. Lucia, M., Kaita, R., Majeski, R., Bedoya, F., Allain, JP., Abrams, T., Bell, R.E., Boyle, DE., Jaworski, MA., Schmitt JC. (2014) “Dependence of LTX plasma performance on surface conditions as determined by in situ analysis of plasma facing components“, Journal of Nuclear Materials 463, pp.907 – 910, August 2015, online 2014.11.06
92. Neff, AL, Allain, J.P., Bedoya, F., Morgan, T., Temmerman,G De. (2014) “High flux irradiations of Li coatings on polycrystalline W and ATJ graphite with D, He, and He-seeded D plasmas at Magnum PSI“, Journal of Nuclear Materials 463, pp. 1147 -1151, August 2015, online 2014.12.3
91. Taylor, C.N, Allain, J.P., Krstic, P.S., Dadras, J., Luitjohan, K.E., Skinner, C.H. (2014) “Differentiating the role of lithium and oxygen in retaining deuterium on lithiated plasma-facing components“, Physics of Plasmas, 21, 057101, Invited Article.
90. Walker, E., Nauman, E., Allain, J.P., Stanciu, L. (2014) “An in vitro model for preclinical testing of thrombogenicity of resorbable metallic stents“, Journal of Biomedical Materials Research Part A, Volume 103, Issue 6, Pages 2118-2125, 2015/6/1, online 2014/10/21

2013

89. El-Atwani, O., Fowler, J., Gonderman, S., Allain, J.P. (2013) “Near sputter-threshold GaSb nanopatterning“, Journal of Applied Physics 114,104308.
88. El-Atwani, O., Suslova, A., DeMasi, A., Gonderman, S., Fowler, J., El-Atwani, M., Ludwig, K., Allain, J.P.(2013) “Nanopatterning of metal-coated silicon surfaces via ion beam irradiation: real time x-ray studies reveal the effect of silicide bonding“, Journal of Applied Physics 113, 12,124305.
87. El-Atwani, O., Efe, M., Heim, B., Allain, J.P. (2013) “Surface damage in ultrafine and multimodal grained tungsten materials induced by low energy helium irradiation“, Journal of Nuclear Materials 434, 1, 170-177. Top 25 Hottest Articles, Journal of Nuclear Materials. April to June 2013, Sciencedirect.
86. Jaworski, M.A., Abrams, T., Allain, J.P., Bell, M.G., Bell, R.E., Diallo, A., Gray, T.K., Gerhardt, S.P., Kugel, H.W., LeBlanc, B.P., Maingi, R., McLean, A.G., Menard, J., Ono, M., Podesta, M., Roquemore, A.L., Sabbagh, S.A., Scotti, F., Skinner, C.H.K., Soukhanovskii, V.A., Stotler, D.P., NSTX Team (2013) “Liquid lithium divertor characteristics and plasma-material interactions in NSTX high-performance plasmas“, Nuclear Fusion, 53, 083032.
85. Kaita, R., Kugel, H.W., Abrams, T., Allain, J.P., Bell, M.G., Bell R.E., Diallo, A., Gerhardt, S.P., Heim, B., Jaworski, M.A., Kallman, J., Kaye, S., LeBlanc, B.P., Maingi, R., Mansfield, D., McLean A., Menard, J., Mueller, D., Nygren, R., Ono, M., Paul, S.F., Podesta, M., Raman, R., Roquemore, A.L., Sabbagh, S.A., Scotti, F., Skinner, C.H., Soukhanovskii, V.A., Taylor, C.N., Zakharov, L. (2013) “Characterization of fueling NSTX H-mode plasmas diverted to a liquid lithium divertor“, Journal of Nuclear Materials, 438, S488-S492.
84. Krstic, P.S., Allain, J.P., Taylor, C.N., Dadras, J., Maeda, S., Morokuma, K., Allouche, A., Skinner, C.H. (2013) “Deuterium uptake in magnetic fusion devices with lithium-conditioned carbon walls“, Physical Review Letters, 110, 10, 105001.
83. Ono, M., Jaworski, M., Kaita, R., Kugel, H.W., Ahn, J-W., Allain, J.P., et al. (2013) “Recent Progress in the NSTX/NSTX-U Lithium Program and Prospects for Reactor-Relevant Liquid-Lithium Based Divertor Development“, Nuclear Fusion 53, 113030.
82. Ono, M., Jaworski, M., Kaita, R., Skinner, CH., Allain, J.P., Maingi, R., Scotti, F., Soukhanovskii, V.A. (2013) “Overview of Innovative PMI Research on NSTX-U and Associated PMI Facilities at PPPL“, Fusion Science and Technology, 63, 21-28.
81. Sabbagh, S.A., Ahn, J-W., Allain, J.P., Andre, R., Balbaky, A., et al. (2013) “Overview of physics results from the conclusive operation of the National Spherical Torus Experiment“, Nuclear Fusion, 53, 104007.
80. Taylor, C.N., Luitjohan, K.E., Allain, J.P., Krstic, P.S., Dadras, J. (2013) “The role of oxygen in the uptake of deuterium in lithiated graphite”, Journal of Applied Physics 114, 223301.
79. Taylor, C.N., Luitjohan, K.E., Heim, B., Kollar, L., Allain, J.P., Skinner, C.H., Kugel, H.W., Kaita, R., Roquemore, A.L., Maingi, R. (2013) “Surface chemistry analysis of lithium conditioned NSTX graphite tiles correlated to plasma performance“, Fusion Engineering and Design, 88, 3157-3164.
78. Yang, Z., Lively, M., Allain, J.P. (2013) “Atomistic simulations of ion-beam patterning with crater functions“, Nuclear Instruments and Methods Research Section B: Beam Interactions with Materials and Atoms, 307, 189.

2012

77. Allain, J.P., El-Atwani, O., Suslova, A., Fowler, J., Taylor, C.N. (2012): “In-situ ion scattering surface characterization of nanostructured materials exposed to controlled irradiation fields“, Microscopy and Microanalysis. 18, S2, 886-887.
76. Allain, J.P., Taylor, C.N. (2012) “Lithium-based surfaces controlling fusion plasma behavior at the plasma-material interface (invited)”, Physics of Plasmas. 19, 5, 056126.
75. Brooks, J.N., Hassanein, A., Sizyuk, T., Allain, J.P.(2012) “Modeling of plasma/lithium-surface interactions in NSTX: Status and key issues“, Fusion Engineering and Design, 87, 10, 1737-1740.
74. El-Atwani, O., Suslova, A., DeMasi, A., Gonderman, S., Fowler, J., El-Atwani, M., Ludwig, K., Allain, J.P.(2012) “Real time x-ray studies during nanostructure formation on silicon via low-energy ion-beam irradiation using ultrathin iron films“, Applied Physics Letters 101, 26, 263104.
73. El-Atwani, O., Allain, J.P., Suslova, A. (2012) “The effect of native oxide on ion-sputtering-induced nanostructure formation of GaSb surfaces“, Applied Physics Letters. 101, 25, 251606.
72. El-Atwani, O., Allain, J.P., Ortoleva, S. (2012) “In-situ probing of near and below sputter-threshold ion-induced nanopatterning on GaSb(100)“, Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, 272, 210-213.
71. Heim, B., Gonderman, S., Taylor, C.N., Allain, J.P. et al. (2012) “The Materials Analysis Particle Probe (MAPP) Diagnostic System in NSTX“, IEEE Transactions on Plasma Science, 40, 3, 735-739.
70. Krstic, P., Allain, J.P., Allouche, A., Jakowski, J., Dadras, J. Taylor, C.N., Yang, Z. (2012) “Dynamics of deuterium retention and sputtering of Li-C-O surfaces“, Fusion Engineering and Design, 87, 10, 1732-1736.
69. Kugel, H.W., Allain, J.P., Bell, M.G., Bell, R.E., Diallo, A. et al. (2012) “NSTX plasma operation with a Liquid Lithium Divertor“. Fusion Engineering and Design, 87, 10,1724-1731.
68. Maingi, R., Boyle, D.P., Canik, J.M., Kaye, S.M., Skinner, C.H., Allain, J.P. et al. (2012) “The effect of progressively increasing lithium coatings on plasma discharge characteristics, transport, edge profiles and ELM stability in the National Spherical Torus Experiment“, Nuclear Fusion. 52,8, 083001.
67. Ono, M., Bell, M.G., Kaita, R., Kugel, H.W., Ahn, J-W., Allain, J.P. et al. (2012) “Recent progress of NSTX lithium program and opportunities for magnetic fusion research“, Fusion Engineering and Design, 87, 10, 1770-1776p.
66. Taylor, C.N., Heim, B., Gonderman, S., Allain, J.P.,Yang, Z., Kaita, R., Roquemore, A.L., Skinner, C.H., Ellis, R.A. (2012): “Materials Analysis and Particle Probe: A compact diagnostic system for in-situ analysis of plasma-facing components (invited)“, Review of Scientific Instruments. 83, 10, 10D703.

2011

65. Allain, J.P. (2011) “Self healing in extreme UV lithography collector mirrors“, SPIE Newsroom, August 17, 2011
64. Allain, J.P., El-Atwani, O., Cimaroli, A., Rokusek, D.L, Ortoleva, S., Suslova, A. (2011) “Study of scalable IBS nanopatterning mechanisms for III-V semiconductors using in-situ surface characterization“, Material Research Society Proceedings, 1354, mrss11-1354-ii02-03.
63. Allain J.P., Brooks, J.N. (2011) “Lithium surface-response modelling for the NSTX liquid lithium divertor“, Nuclear Fusion, 51, 2, 023002.
62. Brooks, J.N., Allain, J.P., Whyte, D.G., Ochoukov, R., Lipschultzm B. (2011) “Analysis of C-MOD molybdenum divertor erosion and code/data comparison“, Journal of Nuclear Materials, 415, 1, S112-S116p.
61. El-Atwani, O., Quach, D.V., Efe, M., Cantwell, P.R., Heim, B., Schultz, B., Stach, E.A., Groza, J.R., Allain, J.P. (2011) “Multimodal grain size distribution and high hardness in fine grained tungsten fabricated by spark plasma sintering“, Materials Science and Engineering: A, 528, 18, 5670-5677p.
60. El-Atwani, O., Allain, J.P., Cimaroli, A., Suslova, A., Ortoleva, S. (2011) “The significance of in situ conditions in the characterization of GaSb nanopatterned surfaces via ion beam sputtering“, Journal of Applied Physics, 110, 7, 074301.
59. El-Atwani, O., Ortoleva, S., Cimaroli A., Allain, J.P.(2011): “Formation of silicon nanodots via ion beam sputtering of ultra-thin gold thin film coatings on Si“, Nanoscale Research Letters, 6, 1, 1-5.
58. Heim, B., Taylor, C.N., Zigon, D.M., O, Dell, S., Allain, J.P. (2011) “Deuterium ion-surface interactions of liquid-lithium thin films on micro-porous molybdenum substrates“, Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, 269, 11, 1262-1265p.
57. Kugel, H.W., Bell, M.G., Allain, J.P., Bell, R.E., Taylor, C.N. et al. (2011) “NSTX Plasma Response to Lithium Coated Divertor“, Journal of Nuclear Materials, 415, 1, S400-S404p.
56. Nieto-Perez M., Allain, J.P., Heim, B., Taylor, C.N. (2011) “Chemical and physical erosion of carbon and metallic substrates containing lithium during low-energy deuterium ion irradiation“, Journal of Nuclear Materials, 415, 1, S133-S136p.
55. Raman, R., Ahn, J.W., Allain, J.P., Andre, R., Bastasz, R., Battaglia, D., Et al. (2011) “Overview of physics results from NSTX“, Nuclear Fusion, 51, 9, 094011p.
54. Skinner, C.H., Allain, J.P., Bell, M.G., Friesen, F.Q.L., et al. (2011) “Lithium wall conditioning and surface dust detection on NSTX, and dust removal“, Physica Scripta T145, 014020.
53. Skinner, C.H., Allain, J.P., Blanchard, W., Kugel, H.W., Maingi, R., Roquemore, L., Taylor, C.N., Soukhanovskii, V. (2011) “Deuterium retention in NSTX with lithium conditioning“, Journal of Nuclear Materials, 415, 1, S773-S776p.
52. Taylor, C.N., Allain, J.P., Heim, B., Krstic, P.S., Skinner, C.H., Kugel H.W. (2011) “Surface chemistry and physics of deuterium retention in lithiated graphite“, Journal of Nuclear Materials, 415, 1, S777-S780p.
51. Taylor, C.N., Heim, B., Allain, J.P. (2011): “Chemical response of lithiated graphite with deuterium irradiation“, Journal of Applied Physics, 109, 5, 053306.

2010

50. Allain, J.P., Nieto-Perez, M., Hendricks, M.R., Zink, P., Metzmacher, C., Bergmann, K. (2010): “Energetic Sn+ irradiation effects on ruthenium mirror specular reflectivity at 13.5-nm“, Applied Physics A, 100 (1) 231-237p.
49. Kugel, H.W., Bell, M.G., Allain, J.P, Bell, R.E., Taylor, C.N. et al. (2010): “Lithium coatings on NSTX plasma facing components and its effects on boundary control, core plasma performance, and operation“, Fusion Engineering and Design, 85, 6, 865-873p.
48. Nieto-Perez, M., Allain, J.P., Ramos, G. (2010) “Modeling of Surface Composition Dynamics in the ITER Divertor Region“, IEEE Transactions on Plasma Science, 38, 414p.

2009

47. Allain, J.P., Rokusek, Harilal, S.S., Nieto-Perez, M., Skinner, C.H., Kugel, H.W., Heim, B., Kaita, R., Majeski, R. (2009) “Experimental studies of Lithium-based surface chemistry for fusion plasma-facing materials applications“, Journal of Nuclear Materials. 390, 942-946p.
46. Brooks, J.N., Allain, J.P., (2009) “Mixed-material evolution analysis of ITER divertor“, Journal of Nuclear Materials. 390, 123-126p.
45. Brooks, J.N., Allain, J.P., Doerner, R.P., Hassanein, A., Nygren, R., Rognlien, T.D., Whyte, D.G. (2009) “Plasma surface interaction issues of an all-metal ITER“, Nuclear Fusion, 49, 3,035007.
44. Gates, D.A., Ahn, J., Allain, J.P., Andre, R., Bastasz, R., Bell, M., Bell, R., Belova, E., et al. (2009) “Overview of results from the National Spherical Torus Experiment (NSTX)“, Nuclear Fusion, 49, 10, 104016.
43. Harilal, S.S., Allain, J.P., Hassanein, A., Hendricks, M.R., Nieto-Perez, M., (2009) “Reactivity of lithium exposed graphite surface“, Applied Surface Science, 255, 20, 8539-8543p.
42. Kugel, H.W., Mansfield, D.K., Maingi, R., Bell, M.G., Bell, R., Allain, J.P., et al. (2009) “Evaporated lithium surface coatings in NSTX“, Journal of Nuclear Materials. 390, 1000 -1004
41. Litnovsky, A., Voitsenya, V., Sugie, T., Allain, J.P., et al. (2009) “Progress in research and development of mirrors for ITER diagnostics“, Nuclear Fusion, 49, 7, 075014.

2008

40. Allain, J.P., Nieto, M., Hassanein, A. (2008) “Specular reflectivity of 13.5-nm light from Sn islands deposited on grazing incidence mirror surfaces“, Applied Physics A, 91, 1, 13-16p.
39. Brooks J.N., Allain, J.P. (2008) “Particle Deposition and Optical Response of ITER Motional Stark Effect Diagnostic First Mirrors“, Nuclear Fusion, 48, 4, 045003.
38. Kugel, H.W., Bell, M.G., Ahn, J-W., Allain, J.P., et al. (2008) “The effect of lithium surface coatings on plasma performance in the National Spherical Torus Experiment“, AIP Physics of Plasmas Vol 15, 5, 056118p. May 2008

2007

37. Allain, J.P., Coventry, M.D., Ruzic, D.N. (2007): “Collisional and thermal effects on liquid lithium sputtering“, Physical Review B, 76, 20, 205434.
36. Allain, J.P., Nieto, M., Hendricks, M., Hassanein, A., Tarrio, C., Grantham, S. Bakshi, V (2007) “Energetic and thermal SN interactions and their effect on EUVL source collector mirror lifetime at high temperatures“, Proc. SPIE 6517m, Emerging Lithographic Technologies XI, 65171V, March 2007
35. Allain, J.P., Nieto, M., Hendricks, M.R., Harilal, S.S., Hassanein, A. (2007) “Debris and radiation induced damage efects on EUV nanolithography source collector mirror optics performance“, Proc. SPIE 6586, Damage to VUV, EUV, and X-Ray Optics, 65860W, May 2018
34. Allain, J.P., Nieto, M., Hendricks, M.R., Plotkin, P., Harilal, S.S., Hassanein, A. (2007) “IMPACT: a facility to study the interaction of low-energy intense charged particle beams with dynamic heterogeneous surfaces“, Review of Scientific Instruments, 78, 11, 113105.
33. Cheng-Yue, L., Allain, J.P., Bai-Quan, D. (2007) “Effects of a liquid lithium curtain as the first wall in a fusion reactor plasma“, Chinese Physics, 16, 11, 3312.
32. Deng, B.Q., Allain, J.P., Zheng-Ming, L., Li-Lin, P., Jian-Cheng, Y. (2007) “Near-surface bipartition model for the study of material response of plasma-facing surfaces exposed to energetic charged particles“, Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, 259, 2, 847-852p.
31. Wong, C.P.C., Rudakov, D.L., Allain, J.P., Bastasz, R.J., et al. (2007) “Divertor and midplane materials evaluation system in DIII-D“, Journal of Nuclear Materials, 363, 276-281p.

2006

30. Allain, J.P., Hassanein, A., Allain, MMC, Heuser, B.J., Nieto, M., et al. (2006) “Xe Irradiation Effects on Multilayer Thin-Film Optical Surfaces in EUV Lithography“, Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms. 242, 1, 520-522.
29. Brooks, J.N., Allain, J.P., Rognlien, T. (2006) “Erosion/redeposition analysis of the ITER first wall with convective and non-convective plasma transport“, Physics of Plasmas, 13, 12, 122502.
28. Insepov, Z., Allain, J.P., Hassanein, A., Terasawa, M. (2006) “Surface erosion by highly-charged ion“, Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms. 242, 1,498-502.
27. Nieto, M., Allain J.P., Hassanein, A. et al. (2006) “Plasma-material interaction studies on lithium and lithiated substrates during compact Tokamak operation“, Plasma and Fusion Science: 16th IAEA Technical Meeting on Research using Small Fusion Devices, AIP CP 875, 1, 78-82.
26. Nieto, M., Allain, J.P., Titov, V., Hendricks, M., et al. (2006) “Effect of xenon bombardment on ruthenium-coated grazing incidence collector mirror lifetime for EUV lithography“, Journal of Applied Physics, 100, 5, 053510.

2005

25. Allain, J.P., Brooks, J.N., ALman, D.A., Gonzalez, L.E. (2005) “Model development and analysis of temperature-dependent lithium sputtering and sputtered Li+ transport for tokamak plasma-facing applications“, Journal of Nuclear Materials. 337, 94-98p.
24. Allain, J.P., Hassanein, A., Nieto, M., Titov, V., Plotkin, P., Hinson, E. et al. (2005) “Erosion and degradation of EUV lithography collector mirrors under particle bombardment“, Microlithography 1110-1117 p. International Society for Optics and Photonics.
23. Allain, J.P., Ruzic, D.N., Alman, D.A., Coventry, M.D. (2005) “A model for ion-bombardment induced erosion enhancement with target temperature in liquid lithium“, Nuclear Instruments and Methods in Physics Research B: Beam interactions with Materials and Atoms. 239, 4, 347-355.
22. Brooks, J.N. Allain, J.P., Alman, D., Ruzic, D. (2005) “Erosion, transport, and tritium co-deposition analysis of a beryllium wall tokamak“, Fusion Engineering and Design, 72, 4, 363-375.
21. Brooks, J.N., Allain, J.P., Bastasz, R., et al. (2005) “Overview of the ALPS Program”, Fusion Science and Technology, 47, 3, 669-677p.
20. Brooks, J.N., Allain, J.P., Rognlien, T., Maingi, R (2005): “PSI modeling of liquid lithium divertors for the NSTX tokamak“, Journal of Nuclear Materials. 337, 1053-1057p.
19. Deng, B.Q., Allain, J.P., Peng, L.L., Wang, X., Zhi, C., Jiancheng, Y. (2005) “Interaction of Impurity (Li, Be, B and C) and hydrogen isotope pellet injection interaction with reactor-relevant plasmas“, Plasma Science and Technology, 7, 1, 2615.
18. Hassanein, A., Allain, J.P., Insepov, Z., Konkashbaev, I. (2005) “Plasma/Liquid-Metal Interactions During Tokamak Operation“, Fusion Science and Technology, 47, 3, 686-697p.
17. Rokusek, D.L., Allain, J.P., Hassanein, A., Nieto, M. (2005) “Erosion Studies of EUVL Candidate Collector Mirror Materials in the Impact Experiment“, Journal of Undergraduate Research, 5, 2005/11, DOESC.

2004

16. Allain, J.P., Brooks, J.N., Whyte, D.G. (2004) “Lithium erosion experiments and modelling under quiescent plasma conditions in DIII-D“, Nuclear Fusion, 44, 5, 655.
15. Allain, J.P., Nieto, M., Coventry, M.D., Stubbers, R., Ruzic, D.N. (2004) “Studies of liquid-metal erosion and free surface flowing liquid lithium retention of helium at the University of Illinois“, Fusion Engineering and Design 72, 1, 93-110.
14. Coventry, M.D., Allain, J.P., Ruzic, D.N. (2004) “Temperature dependence of liquid Sn sputtering by low-energy He+ and D+ bombardment”, Journal of Nuclear Materials, 335, 1, 115-120.
13. Whyte, D.G., Evans, T.E., Wong, C.P.C., West, W.P., Bastasz, R., Allain, J.P., Brooks, J.N. (2004) “Experimental observations of lithium as a plasma-facing surface in the DIII-D tokamak divertor“, Fusion Engineering and Design 72, 1,133-147.

2003

12. Allain, J.P., Coventry, M.D., Ruzic, D.N. (2003) “Temperature dependence of liquid lithium sputtering from oblique 700 eV HE ions“, Journal of Nuclear Materials, 313-316p, 645.
11. Coventry, M.D., Allain, J.P., Ruzic, D.N. (2003) “D+, He+ and H+ sputtering of solid and liquid phase tin“, Journal of Nuclear Materials, 313-316p, 636-640p.
10. Nieto, M., Allain J.P., Ruzic, D.N. (2003) “Experimental measurements of helium retention in flowing liquid lithium“, Fusion Science and Technology. 44,1, 232-236p.
9. Nieto, M., Ruzic, D.N., Allain, J.P., Coventry, MD, Vargas-Lopez, E. (2003) “Helium retention and diffusivity in flowing liquid lithium“; Journal of Nuclear Materials. 313, 646-650p.

2002

8. Allain, J.P., Nieto, M., Coventry, M.D., Neumann, M.J., Vargas-Lopez, E., Ruzic, D.N. (2002) “FLIRE flowing Liquid Surface Retention Experiment, Design and Testing“, Fusion Engineering and Design. 61, 245-250.
7. Allain, J.P., Ruzic, D.N. (2002) “Measurements and modeling of low energy solid-phase lithium sputtering“, Nuclear Fusion, 42, 2, 202.
6. Li, N., Allain, J.P., Ruzic, D.N. (2002) “Enhancement of aluminum-oxide physical vapour deposition with a secondary plasma“, Surface and Coatings Technology, 149, 2, 161-170p.

2001

5. Allain, J.P., Hendricks, M.R., Ruzic, D.N. (2001) “Measurements and modeling of D, He and Li sputtering of liquid lithium“, Journal of Nuclear Materials. Vol. 290-293, 180-184p, March 2001
4. Allain, J.P., Ruzic, D.N., Hendricks, M.R. (2001) “D, He and Li sputtering of liquid eutectic Sn-Li“, Journal of Nuclear Materials, Vol, 290-293, 33-37p, March 2001
3. Brooks, J.N., Rognlien, T., Ruzic, D.N. Allain, J.P., (2001): “Erosion/redeposition analysis of lithium-based liquid surface divertors“, Journal of Nuclear Materials. Vol. 290-293, 185-190p, March 2001
2. Ranjan, R., Allain, J.P., Hendricks, M.R., Ruzic, D.N. (2001) “Absolute sputtering yield of Ti/TiN by Ar+/N+ at 400 to 700 eV“, Journal of Vacuum Science and Technology A., 19, 3, 1004-1007p.

2000

1. Mattas, R.F., Allain, J.P., Bastasz, R., Brooks, J.N., et. al. (2000) “ALPS-Advanced Limiter-divertor Plasma-facing Systems“, Fusion Engineering and Design, V. 49-50, 127-134p, November 2000.

B. Book Chapters

Lang, E., Wang, X., Kolasinski, R., Allain, J.P. (2025) Dispersion-strengthened tungsten alloy composites in: Fusion Energy Technology R&D Priorities, Chapter 3.6 pages 65-69 https://doi.org/10.1016/B978-0-443-13629-0.00008-3
Aditya, T., Posada, V.M., Allain, J.P. (2024), Nanotechnology for Cerebral Aneurysm Treatment: Nanomaterials for Neuroendovascular Treatment and Aneurysm, In: Kateb, B., Heiss, J.D., Yu, J.S., Hsieh, M. (eds) The Textbook of Nanoneuroscience and Nanoneurosurgery. Springer, Cham. https://doi.org/10.1007/978-3-030-80662-0_18, Pages 261-273, Springer Nature Switzerland, Nov 2024
Allain, J.P., Ayala, O., Noriega, M.P., Osswsld, T.A. (2020), Reflections on Convergent Technologies and Industry 4.0 Pillars and Proposals for Reform in the book COLOMBIA ON THE PATH TO A KNOWLEDGE-BASED SOCIETY: Reflections and Proposals Vol.1, Colombian Ministry of Science, Technology, and Innovation and Office of the Vice President, Editors: Clemente Forero Pineda, Moises Wasserman, Tim Andreas Oswald, ISBN 9789585135239, pg 277-288, 2020
Arias, S.,Devorkin, J., Civantos, A., Jaramillo, C., Allain, J.P. (2020) Bioinspired Interfaces for the Management of Skin Infections, In: Li B., Moriarty T., Webster T., Xing M. (eds) Racing for the Surface. Springer, Cham. Print ISBN978-3-030-34474-0, Online March 2020, ISBN978-3-030-34475-7
Allain, J.P., Ruzic, D. (2018) Fundamentals of Plasma-Material Interactions in Magnetic Fusion Devices, In Plasma Science and Technology Basic Fundamentals and Modern Applications. Editor: Haikel Jelassi and Djamel Benredjem, IntechOpen, [Online First] DOI: 10.5772.intechopen.77157.
Allain, J. P., Echeverry-Rendon, M. (2018) Surface treatment of metallic biomaterials in contact with blood to enhance hemocompatibility, In Hemocompatibility of Biomaterials for Clinical Applications: Blood-Biomaterials Interactions. Cambridge Elsevier Science & Technology. (pp. 279-326) Part of ISBN:9780081004975.
Allain, J.P., Echeverry-Rondon, M., Pavon, J.J., Arias, S. (2014). Chapter 2. Nanostructured Biointerfaces, in the book of Nanopatterning and Nanoscale Devices for Biological Applications. Editor: Seila Selimovic, CRC Press 2014, Pages 42-67.
Allain, J.P., Tigno, T., Armonda, R. (2013). Chapter 20. Nanotechnology for Cerebral Aneurysm Treatment, in the book The Textbook of Nanoneuroscience and Nanoneurosurgery. Editors: Babak Kateb and John D. Heiss, CRC Press 2013, Pages 259-282.
Allain, J.P. (2011). Chapter 19. Irradiation Effects on EUV Nanolithography Collector Mirrors, in the book Recent Advances in Nanofabrication Techniques and Applications. Editor: Prof. Bo Cui, ISBN 9789533076027, InTech, December 12, 2011
Allain, J.P., Hassanein, A., Nieto, M.. et al., (2006). Chapter 37. Electrode and Condenser Materials for Plasma Pinch Sources in the book EUV Sources for Lithography, Ed. V.Bakshi, SPIE Monograph Series, 2006.
Allain, J.P., Ruzik, D., (2002). Chapter 8. Deuterium Treatment Effects on Lithium and Tin-Lithium Sputtering in Solid and Liquid Phase, in the book Hydrogen and Helium Recycling at Plasma Facing Materials. Editor: Ahmed Hassanein. Springer Science+Business Media Dordrecht, Volume 54 of the series NATO Science Series pp 73-82

C. Patents

Allain, J.P., El-Atwani, O., Palacio, J.J.: Methods for Directed Irradiation Synthesis with Ion and Thermal Beams.US 11,814,720 B2 (45) Date of Patent: Nov. 14, 2023
Allain, J.P., El-Atwani, O., Palacio, J.J.: Methods for Directed Irradiation Synthesis with Ion and Thermal Beams. US Patent 9,932,664B2
Allain, J.P., Reece, L., Yang, Z., Armonda, R., Kempaiah, R., Tigno, T.: System and Stent for Repairing Endovascular Defects and Methods of Use. US Patent 9,839,724B2